Gene Profiling in Late Blight Resistance in Potato Genotype SD20

Xiaohui Yang, Xiao Guo, Yu Yang, Pei Ye, Xingyao Xiong, Jun Liu, Daofeng Dong, Guangcun Li

Int J Mol Sci.; 2018 Jun 11; 19(6):1728. doi: 10.3390/ijms19061728.

Abstract

Late blight caused by the oomycete fungus Phytophthora infestans (Pi) is the most serious obstacle to potato (Solanum tuberosum) production in the world. A super race isolate, CN152, which was identified from Sichuan Province, China, could overcome nearly all known late blight resistance genes and caused serious damage in China. The potato genotype SD20 was verified to be highly resistant to CN152; however, the molecular regulation network underlying late blight resistance pathway remains unclear in SD20. Here, we performed a time-course experiment to systematically profile the late blight resistance response genes using RNA-sequencing in SD20. We identified 3354 differentially expressed genes (DEGs), which mainly encoded transcription factors and protein kinases, and also included four NBS-LRR genes. The late blight responsive genes showed time-point-specific induction/repression. Multi-signaling pathways of salicylic acid, jasmonic acid, and ethylene signaling pathways involved in resistance and defense against Pi in SD20. Gene Ontology and KEGG analyses indicated that the DEGs were significantly enriched in metabolic process, protein serine/threonine kinase activity, and biosynthesis of secondary metabolites. Forty-three DEGs were involved in immune response, of which 19 were enriched in hypersensitive response reaction, which could play an important role in broad-spectrum resistance to Pi infection. Experimental verification confirmed the induced expression of the responsive genes in the late blight resistance signaling pathway, such as WRKY, ERF, MAPK, and NBS-LRR family genes. Our results provided valuable information for understanding late blight resistance mechanism of potato.

See https://pubmed.ncbi.nlm.nih.gov/29891775/

Figure 4: GO classification of annotated DEGs. X-axis, three major functional categories of GO terms: biological process, molecular function, and cellular component; Y-axis, terms with percentages of DEGs in the major category.