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Genotype imputation for soybean nested association mapping population to improve precision of QTL detection
Genotype imputation for soybean nested association mapping population to improve precision of QTL detection
Saturday, 28-05-2022 | 16:29

Genotype imputation is a strategy to increase marker density of existing datasets without additional genotyping. We compared imputation performance of software BEAGLE 5.0, IMPUTE 5 and AlphaPlantImpute and tested software parameters that may help to improve imputation accuracy in soybean populations. Several factors including marker density, extent of linkage disequilibrium (LD), minor allele frequency (MAF), etc.

The Sm gene conferring resistance to gray leaf spot disease encodes an NBS-LRR (nucleotide-binding site-leucine-rich repeat) plant resistance protein in tomato
The Sm gene conferring resistance to gray leaf spot disease encodes an NBS-LRR (nucleotide-binding site-leucine-rich repeat) plant resistance protein in tomato
Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content
Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content
Identification and fine mapping of a major QTL (qRtsc8-1) conferring resistance to maize tar spot complex and validation of production markers in breeding lines
Identification and fine mapping of a major QTL (qRtsc8-1) conferring resistance to maize tar spot complex and validation of production markers in breeding lines
Domestication Shapes Recombination Patterns in Tomato.
Domestication Shapes Recombination Patterns in Tomato.
The tomato OST1-VOZ1 module regulates drought-mediated flowering
The tomato OST1-VOZ1 module regulates drought-mediated flowering
DNA demethylation affects imprinted gene expression in maize endosperm.
DNA demethylation affects imprinted gene expression in maize endosperm.
Groundnut Bud Necrosis Virus Modulates the Expression of Innate Immune, Endocytosis, and Cuticle Development-Associated Genes to Circulate and Propagate in Its Vector, Thrips palmi.
Groundnut Bud Necrosis Virus Modulates the Expression of Innate Immune, Endocytosis, and Cuticle Development-Associated Genes to Circulate and Propagate in Its Vector, Thrips palmi.
Improving Bambara Groundnut Production: Insight Into the Role of Omics and Beneficial Bacteria.
Improving Bambara Groundnut Production: Insight Into the Role of Omics and Beneficial Bacteria.
Global Survey, Expressions and Association Analysis of CBLL Genes in Peanut.
Global Survey, Expressions and Association Analysis of CBLL Genes in Peanut.
Candidate Genes and Pathways in Rice Co-Responding to Drought and Salt Identified by gcHap Network.
Candidate Genes and Pathways in Rice Co-Responding to Drought and Salt Identified by gcHap Network.
Genetic Trends Estimation in IRRIs Rice Drought Breeding Program and Identification of High Yielding Drought-Tolerant Lines.
Genetic Trends Estimation in IRRIs Rice Drought Breeding Program and Identification of High Yielding Drought-Tolerant Lines.

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